Publications

Book Chapters

1. Tanyeri M, and Tay S
Viable cell culture in PDMS-based microfluidic devices
Methods in Cell Biology, Volume 148
Microfluidics in Cell Biology Part C: Microfluidics for Cellular and Subcellular Analysis (2018)
Editors: Daniel A. Fletcher, Junsang Doh and Matthieu Piel, ISBN: 978-0-12-814284-4, Elsevier.

2. Tanyeri M, and Schroeder CM
Flow-based particle trapping and manipulation
Encyclopedia of Microfluidics and Nanofluidics (2014) Article ID: 347830, Chapter ID: 1770 (ed. Dongqing Li), Springer.

Journal Publications

20. Mustafa A, Ertas Uslu M, and Tanyeri M
Optimizing Sensitivity in a Fluid-Structure Interaction-Based Microfluidic Viscometer: A Multiphysics Simulation Study
Sensors (2023) 23(22), 9265. DOI: https://doi.org/10.3390/s23229265.

19. Yang B, Schinke J, Rastegar A, Tanyeri M, and Viator JA
Cost-Effective Full-Color 3D Dental Imaging Based on Close-Range Photogrammetry
Bioengineering (2023) 10(11), 1268. DOI: 10.3390/bioengineering10111268.

18. Mustafa A, Haider D, Barua A, Tanyeri M, Erten A, and Yalcin O
Machine learning based microfluidic sensing device for viscosity measurements
Sensors and Diagnostics (2023) 2, 1509-1520. DOI: 10.1039/d3sd00099k.

17. Boyd J, Hepner G, Ujhazy M, Bliss S, and Tanyeri M
Dual hydrodynamic trap based on coupled stagnation point flows
Physics of Fluids (2023) 35, 062001. DOI: 10.1063/5.0150089.

16. Mustafa A, Eser A, Aksu AC, Kiraz A, Tanyeri M, Erten A, and Yalcin O
A micropillar-based microfluidic viscometer for Newtonian and non-Newtonian fluids
Analytica Chimica Acta (2020) 1135 107-115.

15. Watterson WJ, Tanyeri M, Watson AR, Cham CM, Shan Y, Chang EB, Eren AM, and Tay S
Droplet-based high-throughput cultivation for accurate screening of antibiotic resistant gut microbes
eLife (2020) 9:e56998.

14. Evans A, Sutton K, Hernandez S, and Tanyeri M
Viscoelastic Hemostatic Assays – A Quest for Holy Grail of Coagulation Monitoring in Trauma Care
Journal of Annals of Bioengineering (2019) (1) 61-64.

13. Mustafa A, Erten A, Ayaz R, Kayillioglu O, Eser A, Irfan M, Muradoglu M, Tanyeri M, and Kiraz A
Enhanced dissolution of liquid microdroplets in the extensional creeping flow of a hydrodynamic trap
Langmuir (2016) 32 (37) 9460-9467.

12. Shenoy A, Tanyeri M, and Schroeder CM
Characterizing the performance of the hydrodynamic trap using a control-based approach
Microfluidics and Nanofluidics (2015) 18 (5) 1055-1066.

11. Johnson-Chavarria EM, Agrawal U, Tanyeri M, Kuhlman TE, and Schroeder CM
Automated single cell microbioreactor for monitoring intracellular dynamics and cell growth in free solution
Lab on a Chip (2014) 14 (15) 2688-2697.

10. Marciel AB, Tanyeri M, Wall BD, Tovar JD, Schroeder CM, and Wilson WL
Fluidic-directed assembly of aligned oligopeptides with π-conjugated cores
Advanced Materials (2013) 25 (44) 6398-6404.

9. Tanyeri M, and Schroeder CM
Manipulation and confinement of single particles using fluid flow
Nano Letters (2013) 13 (6) 2357-2364.

8. Kim Y, Kim SH, Tanyeri M, Katzenellenbogen JA, and Schroeder CM
Dendrimer probes for enhanced photostability and localization in fluorescence imaging
Biophysical Journal (2013) 104 (7) 1566-1575.

7. Tanyeri M, Ranka M, Sittipolkul N, and Schroeder CM
Microfluidic Wheatstone bridge for rapid sample analysis
Lab on a Chip (2011) 11 (24) 4181-4186.

6. Tanyeri M, Ranka M, Sittipolkul N, and Schroeder CM
A microfluidic-based hydrodynamic trap: Design and implementation
Lab on a Chip (2011) 11 (10) 1786-1794.
(selected for the May 23, 2011 issue of Virtual Journal of Nanoscale Science & Technology)

5. Schudel BR, Tanyeri M, Mukherjee A, Schroeder CM, and Kenis PJA
Multiplexed detection of nucleic acids in a combinatorial screening chip
Lab on a Chip (2011) 11 (11) 1916-1923.

4. Johnson-Chavarria EM, Tanyeri M, and Schroeder CM
A microfluidic-based hydrodynamic trap for single particles
Journal of Visualized Experiments (2011) (47) DOI: 10.3791/2517.

3. Tanyeri M, Johnson-Chavarria EM, and Schroeder CM
Hydrodynamic trap for single particles and cells
Applied Physics Letters (2010) 96 224101.
(selected for the June 14, 2010 issue of Virtual Journal of Nanoscale Science & Technology)

2. Tanyeri M, and Kennedy IM
Detecting single bacterial cells through optical resonances in microdroplets
Sensor Letters (2008) Vol. 6 No. 2 p. 326-329.
(cover article)

1. Tanyeri M, Perron R, and Kennedy IM
Lasing droplets in a microfabricated channel
Optics Letters (2007) Vol. 32 Issue 17 p. 2529-2531.
(highlighted in photonics.com and Photonics Spectra, October 2007)

Conference Proceedings

11. Hoying M, Kazimer B,  Evans A, Carbino B, Sutton K,  McCallin R, McGee A
Project MADMEN: Proposed Analogue Fidelity Comparison to ALIEN Martian Mission
IEEE Aerospace Conference (AERO) (2022), Big Sky, MT, USA,  p. 01-10, DOI: 10.1109/AERO53065.2022.9843386.5.

10. Kayillioglu O, Erten A, Tanyeri M, and Kiraz A
Dye Lasing and Laminar Flow-Induced Dissolution in Hydrodynamically Trapped Oil Microdroplets
OSA Technical Digest (2015) pp. OtW2D.4 Optical Trapping Applications 2015.

9. Kayillioglu O, Erten A, Kiraz A and Tanyeri M
Hydrodynamic Trapping of Oil Microdroplets in Glycerol-Water Solution
Proc. BiyoMUT (2014) BIYOMUT 2014: 18th National Biomedical Engineering Meeting, Istanbul, Turkey.

8. Tanyeri M, and Schroeder CM
Confinement and manipulation of single nanoparticles in free solution using a hydrodynamic trap
Proc. NanoTR (2014) 10th Nanoscience and Nanotechnology Conference, Istanbul, Turkey.

7. Tanyeri M
Confinement of single macromolecules in free solution using a hydrodynamic trap
Proc. SPIE (2014) Vol. 8976 p. 89760F Microfluidics, BioMEMS, and Medical Microsystems XII.

6. Tanyeri M, and Schroeder CM
2-D micromanipulation of single nanoparticles in free solution using a microfluidic trap
Proc. MicroTAS (2011) 15th International Conference on Miniaturized Systems for Chemistry and Life Sciences.

5. Schudel BR, Tanyeri M, Schroeder CM, and Kenis PJA
“Total internal reflection fluorescence of molecular beacons in a multiplexed microfluidic device”
Proc. MicroTAS (2009) Vol. 1 p. 36-38 13th International Conference on Miniaturized Systems for Chemistry and Life Sciences.

4. Tanyeri M, Perron R, and Kennedy IM
Lasing droplets in a microfluidic T-junction device with integrated optics
Proc. SPIE (2007) Vol. 6465 p. 64650E Microfluidics, BioMEMS, and Medical Microsystems V.

3. Tanyeri M, Dosev DK, and Kennedy IM
Chemical and biological sensing through optical resonances in pendant droplets
Proc. SPIE (2005) Vol. 6008 p. 60080Q Nanosensing: Materials and Devices II.

2. Tanyeri M, Nichkova M, Hammock BD, and Kennedy IM
Chemical and biological sensing through optical resonances in microcavities
Proc. SPIE (2005) Vol. 5699 p. 227-236 Imaging, Manipulation, and Analysis of Biomolecules and Cells: Fundamentals and Applications III.

1. Tanyeri M, and Kennedy IM
Microdroplets for integrated high-sensitivity biosensors
Proc. SPIE (2004) Vol. 5275 p. 133-140 BioMEMS and Nanotechnology.

Patents

1. Tanyeri M, Lin J, Abasiyanik F, Angarita Marmolejo YD
Rapid Enumeration of Microorganisms
US Application No: 63/184,447 (May 5, 2021), WO 2022/235284 (Nov 10, 2022)..

2. Yalcin O, Erten A, Tanyeri M
Microfluidic Thromboelastometry Instrument
US2021/0268497 (Sep 2, 2021), WO 2020/027741 (Feb 6, 2020), EP3830573 (Jul 29, 2018).

3. Kim Y, Kim SH, Tanyeri M, Katzenellenbogen JA, and Schroeder CM
Dye-conjugated dendrimers
US Patent 9,448,173 (September 20 2016).

4. Tanyeri M, Perron R, and Kennedy IM
Optical resonances in droplets in a microchannel
WO Patent 2,008,030,281 (March 14 2008).